These healthy blueberry muffins are an incredible breakfast or mid-afternoon treat. Like our Healthy Breakfast Egg Muffins and Spanakopita Egg Bites, they’re sized for one and self-contained, making them convenient and portable.When you look at the nutrition of most blueberry muffins, they’re essentially cupcakes without frosting, which means they are decidedly not Mediterranean Diet friendly. However, these healthy whole wheat blueberry muffins break the mold by using more flavorful and wholesome ingredients. They’re nutty, fluffy and bursting with fresh blueberry flavor without all the added sugar. I like to bake and freeze these muffins on the weekend or a night when I find some extra time. I pack one for work and, by lunchtime or my coffee break, it’s thawed and ready to go! Not only do I get a delicious homemade muffin, but I also have a snack that fuels the rest of my afternoon rather than nosedives me into a sugar slump.

What Makes a Healthy Muffin?

When developing this recipe I decided to stay away from refined sugar and refined flour, taking a page from our Healthy Carrot Cake Recipe. Instead I used honey and 100% whole-grain flour for a boost in fiber, protein, and micronutrients. According to the USDA, “100 grams of whole wheat flour [about 2/3 cup] contains 10 to 12 grams of fiber, while an equal amount of refined (white) flour contains 2 to 3 grams of fiber.” So if you’re not sold on using 100% whole wheat flour start with a 50/50 ratio of whole wheat and white flour. You’ll still increase the fiber content and stay full longer. Then you can progressively increase the amount of whole wheat flour and reduce the white flour over time.Blueberries are well known for their exceptional antioxidant content and extra virgin olive oil is considered one of the healthiest oils available. Butter is usually called upon to create a tender muffin, but applesauce is a great substitute, and I use it here.So for this recipe, I used unsweetened applesauce to give these muffins extra moisture without the addition of butter. The natural sweetness from the applesauce also helps reduce the need for lots of sugar.

Ingredients for Healthy Blueberry Muffins 

These blueberry muffins may have a slightly longer ingredient list than your standard blueberry muffins recipe. It’s worth it: they’re full of nutritious pantry ingredients you can easily find at the store if you don’t have them already. Here is what you’ll need to get started:

White whole wheat flour: A healthy and flavorful whole grain flour that becomes fluffier than standard whole wheat flour. King Arthur is fairly easy to source, but you can substitute with 1 cup whole wheat flour mixed with 3/4 cup all-purpose flour if necessary. Whole Wheat Pastry flour is also a great option. Baking powder and baking soda: Leavening agents that give the muffins their soft and airy texture.  Kosher salt: Even in sweeter recipes, salt is a flavor enhancer that brings out the best of the other ingredients. Cinnamon: Just a hint of cinnamon adds some nuance to the nutty whole wheat and sweet blueberries. Honey: A natural, unrefined sugar. It is also a humectant, meaning it helps to keep the muffins moist for days. Use a high quality honey, like our Alfa Honey from Crete with tasting notes of fresh thyme.  Apple sauce: Unsweetened apple sauce adds moisture to the batter. Extra-virgin olive oil: Less processed than other vegetable oils, extra-virgin olive oil is rich in antioxidants and micronutrients. It also has a beautiful fruity and floral flavor. I like to use a smooth, buttery olive oil, like our Nocellara.  Milk: You can use any whole, skim, low fat, or plant-based milk you prefer. You could also substitute with Greek yogurt, but the muffins will be denser. Egg: A whole egg is used as a binder, giving structure and holding the ingredients together. Feel free to use a flax egg instead, but the muffins won’t be quite as fluffy. Blueberries: Fresh blueberries work best, but you can use frozen in a pinch. You will need to adjust the baking time a few minutes longer. If using frozen, the muffin batter may take on a blueish hue. Vanilla extract: The flavor of the whole wheat flour and blueberries is enhanced by a small amount of vanilla extract.

What is White Whole Wheat Flour?

It may sound like white whole wheat flour is a flour blend, bleached whole wheat flour, or partially sifted. In reality, it genuinely is an unbleached whole grain. To make white whole wheat flour, millers use a hard white wheat berries. It’s nutritionally equivalent to red whole wheat flour but lighter in color and less bitter. By using white whole wheat flour, you benefit from the boost in nutty flavor and nutrition (fiber, vitamins, and minerals) without any of the dryness or bitterness.

How to Make Healthy Blueberry Muffins

Making healthy blueberry muffins couldn’t be easier. The batter comes together in less than 10 minutes and the muffins are ready to eat within the hour. Be sure to let the batter rest after mixing to hydrate the flour and improve the texture. You can do this while the oven finishes preheating.

Get ready: Preheat the oven to 375°F. Lightly grease a standard 12-cup muffin pan or line with cupcake liners. Mix the dry ingredients: In a large mixing bowl, whisk together 1 3/4 cups white whole wheat flour, 1 teaspoon baking powder, 1/2 teaspoon baking soda, 1/2 teaspoon salt, and 1/4 teaspoon cinnamon. Mix the wet ingredients: In a separate bowl, whisk together 1/2 cup honey, 1/2 cup apple sauce, 1/3 cup olive oil, and 1/4 cup milk. Add 1 large egg and 1 teaspoon vanilla extract and whisk until fully combined. Combine: Pour the wet ingredients into the dry ingredients. Use a rubber spatula to fold the batter together until just combined. Do not overmix. It’s okay if there are a few lumps. Fold in the blueberries: Stir in 1 1/2 cups blueberries with the spatula. Let the batter stand for 20 minutes to allow the flour to hydrate.  Divide the batter: Scoop or pour the batter into the prepared muffin pan. Divide the batter evenly among the wells, until each is about 3/4 full. Bake: Bake for 22 minutes, or until a toothpick inserted into the center of one of the muffins come out clean. Cool: Let the muffins cool in the pan for 10 minutes, then turn them out onto a wire rack to cool completely. If any muffins are stuck, run a butter knife around the edge of each muffin to free them from the pan.  Serve: Enjoy immediately. Or, transfer to an airtight container at room temperature or freezer bag in your freezer to store. 

How to Store Whole Wheat Blueberry Muffins

The muffins will keep in an airtight container at room temperature for up to 4 days. To freeze the muffins, place them in a freezer-safe container or freezer bag. They will keep for up to 3 months. Uncover and thaw frozen muffins on the counter.

What to Serve with Blueberry Muffins

These healthy muffins are welcome at any brunch or special occasion breakfast. Though they feel celebratory, they’re also an excellent make-ahead breakfast for busy mornings. Serve them on their own for a small snack. Or, they’re especially indulgent with jam and a drizzle of honey, compote, or fresh fruit and a hot cup of coffee or tea, like our Arabic Tea With Fresh Mint. Browse all Mediterranean recipes.

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